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SRX24222644: GSM8197837: AFB1-fed larvae, 5 day + 72h, replicate 1; Hermetia illucens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 19.7M spots, 6G bases, 1.9Gb downloads

External Id: GSM8197837_r1
Submitted by: Laboratory of Entomology, Wageningen University
Study: Effects of aflatoxin B1 on metabolism- and immunity-related gene expression in Hermetia illucens L. (Diptera: Stratiomyidae)
show Abstracthide Abstract
Contamination of food products with mycotoxins such as aflatoxin B1 (AFB1) poses a severe risk to human health. Larvae of the black soldier fly (BSFL), Hermetia illucens (Diptera: Stratiomyidae), can successfully metabolize AFB1 without any negative consequences on their survival or growth. However, the underlying mechanisms that allow BSFL to metabolize AFB1 are unknown. In this study, five-day-old BSFL were fed with either a control or an AFB1-spiked (20 µg/kg) diet to elucidate the underlying mechanisms. Larval samples were collected at three timepoints (6 h, 24 h, and 72 h) and subjected to RNA-Seq analysis to determine gene expression patterns. Provision of an AFB1-spiked diet resulted in an up-regulation of 357 and a down-regulation of 929 unique genes. Upregulated genes include multiple genes involved in AFB1 metabolism in other (insect) species. Downregulated genes were generally involved in the insects' growth, development, and immunity. BSFL possesses a diverse genetic arsenal that encodes for enzymes capable of metabolizing AFB1 without trade-offs on larval survival. Overall design: Five-day-old BSF larvae were fed on control or AFB1-spiked chickenfeed diet. Samples were collected from respective treatment at 6 h, 24 h and 72 h post-treatment respectively. Total RNA was extracted and sequenced. Genes that were differentially expressed due to AFB1 feeding were determined using DESeq2, and the affected biological processes were determined using gene ontology (GO) analysis.
Sample: AFB1-fed larvae, 5 day + 72h, replicate 1
SAMN40927487 • SRS20992331 • All experiments • All runs
Library:
Name: GSM8197837
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Five replicates (of two pooled larvae each) were collected from control and AFB1-treatments, respectively at each time point and flash-frozen in liquid nitrogen. Total RNA was extracted with TriZol reagent and subjected to DNase treatment, protein purification and stored at -80 degree C. The quality of total RNA was evaluated using Agilent Bioanalyzer and DeNovix Bioanalyzer. Library preparation was performed at BaseClear B.V. (Leiden, Netherlands). Sequencing libraries were sequenced paired-ended (150 bp read-length) on an Illumina NovaSeq 6000 platform.
Runs: 1 run, 19.7M spots, 6G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR2862462819,732,3236G1.9Gb2024-06-18

ID:
32534665

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